Ooh, I had not heard of FanFicFare. Mostly because I use Calibre only when absolutely necessary. I am very picky about organizing my digital files my way, and Calibre states outright that their whole purpose is to organize the files for you. So I use it as a converter when I need one, but not for anything else. However, I may have to change this, because while I'm quite happy with FanfictionDownloader (not the precursor to FanFicFare, but the unrelated program) for ff.n files, there are a couple sites that would be soooooo much easier to grab stories from. I was going to resort to manually creating epubs for those (which I'll still have to for some), which I'm pretty good at, but this will be much faster for at least that handful of sites! So thank you for mentioning that!

For an example of my extreme pickiness about organization, I ended up creating a database this summer just so I could find the fics I wanted to find, and make lists fitting specific criteria easily. One of my friends just laughed when I told her and said "that is so something you would do", lol.